Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015902054.1_cds_XP_016452062.1_46342
CDS Infomation

[gene=LOC107776665] [db_xref=GeneID:107776665] [protein=CSC1-like protein At4g02900 isoform X2] [protein_id=XP_016452062.1] [location=complement(join(24595..24810,25042..25275,25742..26066,26874..27119,27606..27946,28657..28737,28856..28975,29226..29327,29421..29556,30101..30228))] [gbkey=CDS]
Sequence

ATGCTTTCTTTTGCGGTTTTAGTGCCTGTTAATTGGACTGCTGGGGAAACATTAGAGCAC
ATTGAGGATCTAACGTTCAGTAATATTGATAGACTTTCCATATCCAATGTCCCTTCAGGA
TCACAGAGGTTTTGGGCACACGTGATGATGGCTTATGTATTCACATTTTGGACCTTCTAT
ATTTTGTACAAAGAATACAAGACAATATCAACAATGAGACTGCATTTTCTTGCCTCTGAA
AACCGTCGGCCTGATCAGTTCACGGTCCTTGTTAAAAATGTCCCACCAGATCCTGATGAA
TCAGTGGACGAGCATGTTGAACATTTCTTTCGTGTGAATCATCCAGATCATTATCTTACA
CATCAGGTTGTTTACAATGCAAATAAGCTTGCTGAATTGGTGGAAAAGAAAAAGAGTTTC
CGTAATTGGCTTACGTACTACCAAACCAAGTATGAGAGGAACCCTGTGAAGAAGCCAAAA
ATTAAGACAGGCTTTTGGGGCCTTTGGGGAAAATCCGTGGATGCCATCGACTATTATATG
ACTGAAATTGAGAAGTTGGGCGAAGAAGAAGCTGAAGAAAGAGAAAAGGTTATAAGTGAT
CCCAACGCAATCGTTCCTGCAGCATTTGTCTCATTTAAATCTCGTTGGGGAGCAGCTGTA
TGTGCTCAAACACAACAATCAAGAAACTCAACCATTTGGTTGACAGAATGGGCTCCTGAA
CCACGTGATGTCTATTGGGATAATCTTTCAATACCATATATTCAACTTGCTGTCCGGAGA
CTGCTAATGGCTGTTGCTTTATTCTTTCTTACTTTCTTTTTTATGATCCCAATTGGATTC
GTTCAAGCATTCGCAAGCATTGATGGCATCAAAAAGGTTCTTCCGTTCCTGAAGTCATTA
ATCGAAATGGATGTTGTCAAATCATTTGTCCAAGGTTTTCTACCCGGGATTGTATTAAAG
ATATTTCTGATTCTTCTTCCTATGATTCTTATGATCATGTCAAAAATAGAAGGCTTTACA
TCGCTCTCATCTTTGGACAGAAGATCAGCATCTAAATATCATTTGTTTGTCATTGTCAAT
GTGTTCTTTGGAAGTATCATTACTGGTGCTGCATTTCAACAGCTTCAGAGGTTTCTCGAT
CAGTCTCCAACAGAGATTCCAAAAACTATTGGTGTAACTCTTCCCATGAAAGCTACTTTC
TTTATTACCTTCATAATGGTTGATGGCTGGGCTGGAATTGCTGCAGAGATCCTGAGATTG
GTTCCTTTAGTCATGTTTCACATTAAAAATACATTTCTGGTAAAGACAGACCATGACAGG
GAGCAGGCAATGGACCCTGGTTCATTAAACTTTTCTGTATCAGAACCTCGATTACAACTG
TACTTCCTCCTAGGCCTTGTGTACTCAGTGGTCACACCAATACTCCTGCCTTTCATCATT
GTCTTCTTTGCGTTTGCTTATATGGTTTTCCGCCATCAGATCATTAATGTATACGATCAG
AAGTATGAGAGTGGTGCATCATTTTGGCCAGATGTCAATCGTCGTATACTTATAGGTTTG
GTAATATCCCAGCTTCTGTTAATCGGTCTCCTGAGCACCAAAGATACTGCCAAATCAACT
CCATTGCTGATAGTACTTATAGTTTTGACAATCTGGTTCCATAAACTTTGCAAGGGCAGA
TTTGAGTCCGTCTTTGTCAAATTTCCCTTGCAGGATGCAGTGGTGAAGGATACAGTAGAA
CGGAGTACAGAACCAAACTTCAATTTGAAAGAATATCTACAGGATGCTTATTTGCACCCT
GTGCTCAAAGTGGTTAAGTTTGAAGTATCAAAAGAAATTGATGAGGAGAATCCACTTGTT
GCTACCAAGAGGACTTCCCAAAGGAGTAGTAAGACTGTCTCTAATGGCACTGCTGAAGAT
GGTCTCTGA

Peptide Sequence

PEP ID

XP_016452062.1
PEP Infomation

PREDICTED: CSC1-like protein At4g02900 isoform X2 [Nicotiana tabacum]
Sequence

MLSFAVLVPVNWTAGETLEHIEDLTFSNIDRLSISNVPSGSQRFWAHVMMAYVFTFWTFY
ILYKEYKTISTMRLHFLASENRRPDQFTVLVKNVPPDPDESVDEHVEHFFRVNHPDHYLT
HQVVYNANKLAELVEKKKSFRNWLTYYQTKYERNPVKKPKIKTGFWGLWGKSVDAIDYYM
TEIEKLGEEEAEEREKVISDPNAIVPAAFVSFKSRWGAAVCAQTQQSRNSTIWLTEWAPE
PRDVYWDNLSIPYIQLAVRRLLMAVALFFLTFFFMIPIGFVQAFASIDGIKKVLPFLKSL
IEMDVVKSFVQGFLPGIVLKIFLILLPMILMIMSKIEGFTSLSSLDRRSASKYHLFVIVN
VFFGSIITGAAFQQLQRFLDQSPTEIPKTIGVTLPMKATFFITFIMVDGWAGIAAEILRL
VPLVMFHIKNTFLVKTDHDREQAMDPGSLNFSVSEPRLQLYFLLGLVYSVVTPILLPFII
VFFAFAYMVFRHQIINVYDQKYESGASFWPDVNRRILIGLVISQLLLIGLLSTKDTAKST
PLLIVLIVLTIWFHKLCKGRFESVFVKFPLQDAVVKDTVERSTEPNFNLKEYLQDAYLHP
VLKVVKFEVSKEIDEENPLVATKRTSQRSSKTVSNGTAEDGL

Transcript Sequence

Gene sequence data has not been registered.